It is normal for headers to run "hotter" than the stock manifolds, because of the thinner tubing in them. The stock manifolds get hot on the inside, but it takes longer for the heat to travel thru the walls to get to the outside, so more of the heat goes farther back in the exhaust. The headers allow more heat transfer in the engine compartment. This also allows the headers to cool off faster than manifolds, after the engine is shut off.