Ok to clarify, the original trans is a w56 and I believe the replacement trans is a g52 or g54, not sure. I did cut the floor to allow the shifter to throw further foward and it isnt binding. Could the tranny just be messed up? It was laying in some junkyard and he was told it worked. Seems weird though that only 1, 3, 5 grind. They will engage but pop out and grind bad when you release the clutch.
The only other things I can think of are: 1. Re-used clutch and flywheel (looked ok), 2. Re-used throw out bearing (it looked like it needed changing but he claims the truck had to run today), 3. Didnt change tranny fluid.