Thats weird. I know you got it fixed, but you should not have had to do that.. There should not be any modifications necessary in order for our Twin Sticks to shift properly. They should work just fine atop a T/case no matter if its a single case or a rear case. I wonder if you have a shifter from a different transmission that is angled differently than your stock one?
Glad you got it fixed, sorry you had to modify it.
Regards,
BigMike